RnoEX0018902 @ rn6
Exon Skipping
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117961989-117966975:+
Coord C1 exon
chr8:117961989-117962162
Coord A exon
chr8:117964991-117965089
Coord C2 exon
chr8:117966913-117966975
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTACCTTGGATTTGTTACAGCTT
3' ss Score
7.05
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCCGATCGATGTGGACTGTTTGACTCCCCTTCCCCGTGCAGCTCCACCAGCAGCTGCAGCACTCGGGCAGTGAAGAGAGCAGACCGATCTCATGAGGAGTCTCCTCGAGGTACAAAGCGGAGGAAGAGCAGTGAGGCCAGTCCAGTGAAGGCAGATGTTCCGGAGCCAACGCAG
Seq A exon
CTTCCACACCAGTCTCTCTCCCTGACATCTTTCCCCAAAGGAACCATTGAGAACATTTTGGACAGTGACCCAAGAGACCTTATAGGGGATTTCTCCAAG
Seq C2 exon
GGTTACCTCTTTCATACGGTCTCTGGGAAGCATCAGGATTTGAAATATATTTCTCCAGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.212 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(23.3=100)
A:
PF066178=M-inducer_phosp=PD(7.3=54.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCAGCAGCTGCAG
R:
TCCTGATGCTTCCCAGAGACC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]