BtaEX0008046 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51856782-51857999:-
Coord C1 exon
chr13:51857820-51857999
Coord A exon
chr13:51857546-51857641
Coord C2 exon
chr13:51856782-51856844
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGCTGCCACTTGCCTCACAGAAA
3' ss Score
6.98
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GACCTCATCATGTACAGCAAGTGCCAGCGGCTCTTCCGCTCTCCGTCCATGCCCTGCGGTGTGATCCGGCCCATCCTCAAGAGGCTGGAGCGCCCGCAGGACCGGGATCTGCCTGTACAGAACAAGCGGAAAAGGAGCGTGACTCCTCCAGAGGAGGAACTGCAGGAAGCTGAGGAACCC
Seq A exon
AAAGCCCGCATTCTCCGCTCAAAGTCTCTGTGTCATGATGAAATTGAGAATATCCTGGACAGTGACCACCGAGAACTGATCGGGGATTACTCCAAG
Seq C2 exon
GCCTTCCTCCTACAGACTGTGGATGGAAAGCACCAAGACCTCAAGTACATCTCACCAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(30.7=100)
A:
PF066178=M-inducer_phosp=PD(8.9=53.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCGCTCTCCGTCCATG
R:
GGTGCTTTCCATCCACAGTCT
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development