RnoEX6058479 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27534677-27540361:-
Coord C1 exon
chr18:27540212-27540361
Coord A exon
chr18:27536255-27536356
Coord C2 exon
chr18:27534677-27534739
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGGGAGTTTTGTCTTTTCAGGGC
3' ss Score
8.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAAAATGGAATCTTGCTGGAAAGTGAAATGAAGAATCTGGGCAGTCCCATTACTACAGTTCCAAAACTGAGTAAAAATCTCAAGCTAGAAGACCAAGAAGGGATTTCAGAAGACCCAATGGAGTGTTCCCTGGAAGACCAAGATGCCAAG
Seq A exon
GGCTTAAGTCTGAAGAAGACGGTCCCTCTCTGTGGCATGGATGCCATTGAGTTGGAGGAGGAAGATTCTGACTCAGAGCATCTGACTGGTGATTTCTCAAAG
Seq C2 exon
GCGTGTGTACTGCCAACGGTGCCAGGGAAACACCAGGATCTGAAGTATATCAGCCCAGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'9-16,'9-11,11-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=0.353 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(28.3=100)
A:
PF066178=M-inducer_phosp=PD(11.0=55.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAATCTTGCTGGAAAGTGA
R:
TGTATCTGGGCTGATATACTTCAGA
Band lengths:
210-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]