BtaEX6040700 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51317183-51319448:-
Coord C1 exon
chr7:51319296-51319448
Coord A exon
chr7:51318244-51318345
Coord C2 exon
chr7:51317183-51317245
Length
102 bp
Sequences
Splice sites
3' ss Seq
CGGGGGAATCTTGTCTTCAGGGC
3' ss Score
6.39
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCACCTCTGAACTGGAGCTCCCTGTATCGCTCCTCATCATTGCCAGACAGCTTAAACAGTCCAAGTTTGAAGCAGGTGGTAAAATTCAAGGACAGCACAATACCAGATAAACTAAAAAAGAAGTATTGTTCAAACCAAAAAGAGCTCGGAAAG
Seq A exon
GGCTTAGGTCTAAAGAAAATGGTCTCCCTCTGTGACATCAATATGACTCAGATGCTGGAGGAAGATTCAAACCAGGGGCCTCTGATTGGTGATTTCTCCAAG
Seq C2 exon
GTATGTGCACTGCCAACCGTGTCAGGGAAACACCAAGATCTGAAGTACGTCAACCCAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293-'15-17,'15-15,16-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(41.0=100)
A:
PF066178=M-inducer_phosp=PD(13.9=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGAACTGGAGCTCCC
R:
TCTGGGTTGACGTACTTCAGA
Band lengths:
210-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]