BtaEX0008085 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30903026-30946963:-
Coord C1 exon
chr16:30946872-30946963
Coord A exon
chr16:30909839-30909996
Coord C2 exon
chr16:30903026-30903109
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCTTTTTGCTTTCAGGAA
3' ss Score
11.71
5' ss Seq
CAGGTGTCA
5' ss Score
1.32
Exon sequences
Seq C1 exon
CTAAACCATTTACTTCTAAAGTGAAACAGATGCGATTACATAGAGAAGACTTTGAAATATTAAAGGTGATTGGTCGAGGGGCTTTTGGAGAG
Seq A exon
GAAAACCTTTAACTTACGCCCTGGGTGTTGCCTGTCCACAGTTTCCTGGTGGCTCACCGCTTCTGCCTGCTCCAGCCTTGCTCCGGCAGCTTCAAGGCTTCTGGGCTTCAGAGCTTGTTGTGAAAGCTTGCTGCTTTGGCCTGCTACCCCTGCTTCAG
Seq C2 exon
GTTGCTGTAGTGAAACTAAAAAATGCAGATAAAGTATTTGCCATGAAAATATTGAATAAATGGGAAATGCTGAAAAGAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(23.6=41.9)
A:
NO
C2:
PF0006920=Pkinase=FE(10.1=100)
Main Inclusion Isoform:
ENSBTAT00000029173fB1551
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTTACTTCTAAAGTGAAACAGA
R:
TCAGCTCTTTTCAGCATTTCCCA
Band lengths:
171-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development