MmuEX0010394 @ mm9
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:181929493-181961719:+
Coord C1 exon
chr1:181929493-181929584
Coord A exon
chr1:181954776-181954933
Coord C2 exon
chr1:181961636-181961719
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCTTTTTGCTTTCAGGAA
3' ss Score
11.71
5' ss Seq
CAGGTGTCA
5' ss Score
1.32
Exon sequences
Seq C1 exon
CTAAACCATTTACTTCTAAAGTGAAGCAAATGCGATTACATAGAGAAGACTTTGAAATATTAAAGGTGATTGGTCGAGGAGCTTTTGGGGAG
Seq A exon
GAAAACCTTTAACTTACGCCCTGGGTGTTACCTGTCCACAGCTTCCTGGTGGCTCACCGCTTCTGCCTGCTCCAGCCTTGCTCCGGCAGCTTCCAGGCTTCTGGGCTTCAGAGCTTGTTGTGAAAGCTTGCTGCTTTGGCCTGCTACCCCTGCTTCAG
Seq C2 exon
GTTGCTGTAGTTAAACTAAAAAATGCAGATAAAGTATTCGCCATGAAAATTCTGAACAAGTGGGAAATGCTGAAAAGAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(4.9=41.9)
A:
NO
C2:
PF0006920=Pkinase=FE(10.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATTTACTTCTAAAGTGAAGCA
R:
AGCTCTTTTCAGCATTTCCCACT
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: