BtaEX0008095 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69282309-69287811:-
Coord C1 exon
chr21:69287595-69287811
Coord A exon
chr21:69287419-69287481
Coord C2 exon
chr21:69282309-69282357
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCCGTTGCGTCGTTCACAGACG
3' ss Score
8.94
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGACGGCCTCTCTCTTAGGTGCCCCTTCTAAGACCAGCTCGCTGCTCATCCTGACAGAGAACGAAAATGAGAAGCGGAAATGGGTGGGGATCTTGGAGGGCCTGCAGGCCATCCTCCAGAAGAACCGCCTGCAGAGCCAGGCGGTGCACGTGCCCCAGGAGGCCTACGACAGCTCGCTGCCCCTCATCAAGGCCGTGCTCACGGCCGCCATCCTGG
Seq A exon
ACGGGGACCGGATCGCTATTGGCCTCGAGGAAGGGCTCTACGTCATAGAGGTGACCCGGGATG
Seq C2 exon
GGGATCTGAACCAGGAGTGGCTGTGCCGCTAAGGAGTATGTCTGACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456_MULTIEX1-21/28=20-28
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(7.9=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATCCTCCAGAAGAACC
R:
ACAGCCACTCCTGGTTCAGAT
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development