RnoEX0019007 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135754822-135757027:-
Coord C1 exon
chr6:135756811-135757027
Coord A exon
chr6:135756650-135756712
Coord C2 exon
chr6:135754822-135755421
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCCACACGTTGTTTCCCCAGATG
3' ss Score
10.05
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGACGGCCTCTCTCTTAGGTTCACCTTCTAAGACCAGCTCACTGCTCATCCTGACAGAGAACGAGAATGAAAAGAGGAAGTGGGTTGGGATCCTGGAAGGGCTGCAGGCTATCCTCCACAAGAACCGGCTGAGGAGCCAGGTGGTGCACGTGGCACAGGAAGCGTACGACAGCTCACTGCCGCTCATCAAGACCGTCCTGGCTGCCGCTATTGTGG
Seq A exon
ATGGAGACAGAATTGCGGTCGGCCTGGAAGAAGGGCTCTACGTCATTGAGCTCACCCGAGATG
Seq C2 exon
TGATCGTCCGCGCTGCTGACTGCAAGAAGGTATACCAGATCGAGCTGGCGCCCAAGGAGAAGCTCATCCTCCTCCTCTGTGGCCGGAACCACCACGTGCACCTCTACCCCTGGACCTCCTTCGATGGAGCAGAAGCTAGCAACTTTGACATCAAGCTCCCAGAAACGAAGGGCTGCCAGCTCATAGCAACAGGGACGCTGAGGAAGAGCTCGTCCACCTGCCTGTTTGTCGCCGTGAAGCGGCTGGTCCTTTGCTACGAGATCCAGAGAACTAAGCCTTTCCACCGGAAGTTCAATGAGATCGTGGCCCCGGGACATGTGCAGTGGATGGCCATGTTCAAGGACAGGCTCTGTGTTGGCTACCCCTCCGGGTTCTCTCTGTTGAGCATCCAGGGGGACGGGCAGCCTCTAGACCTGGTAAATCCCGCTGACCCCTCGCTCGCGTTCCTCTCACAGCAGTCTTTCGATGCCCTCTGTGCTGTAGAGCTCAAAAGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'51-50,'51-48,52-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(7.9=100)
C2:
PF0078017=CNH=FE(74.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCGTACGACAGCTCAC
R:
CACAGAGGAGGAGGATGAGCT
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]