DreEX6044379 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18514229-18518310:-
Coord C1 exon
chr20:18518094-18518310
Coord A exon
chr20:18514916-18514978
Coord C2 exon
chr20:18514229-18514825
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTTCCACTGCAGATC
3' ss Score
11.53
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GTAACCTCGTCGGCTCTGAAATCCTCGATCCGGCCAGTTCCTTTGCTGATTTTAGCTGAGAGCGAGGCGGAGAAGAGGAAGTGGGTGGGCATCCTAGAGGGCCTGCAGAGCATCCTAGCCAAAAACCGGCTGAAGAACCGCGTGGTGCATGTGCTGCACGAGGCCTACGACAGCAGCCTACCTGCCATCAAAACTACACTTTCTGCTGCCATCGTAG
Seq A exon
ATCGAGAACGAATTGTCTTGGGGACAGAAGATGGCCTTTTTGTAGTCGAGATCACCAGAGATG
Seq C2 exon
TCATTGTTCGTGCCGCTGACTGTAAAAAAGTCTGCCAGATCGAGCTCATCCCCAAAGAGAAGATGGTGGCCCTGCTTTCTGGCCGTAATCGCCATGTCCATTTATACCCCTGGGCGGCACTAGAGGGCGCTGAAGGGGGTTTCGATGCCAAGCTGACAGATACGAGAGGCTGCCAGGCCATGACCATCGGTAACCTCCGCCCTGGCGGTCCAGCGTGTCTCTTTGCAGGCGTGAAGCGGCAGGTTTTCTGTTATGAAATCACACGAGCGAAACCCCATCATCGCAAACTCTGGGAAGTGCAGGCGCCAGGGGTCGTCCAATGGCTGGGGATAATTCGAGAACGGATCTGCGTAGGTTACCCATCAGGCTTTGCTCTGCTGGCCATGCAGGGAGAATCGTCGCCGGTCAGTCTGGTGAGCCCAGGTGACCCCTCGCTGGCATTTTTGGCCCAGCAGCCTCTGGATGCACTTCATGCTATGGAAGTGGGGTCCAATGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'35-38,'35-37,36-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(30.3=49.3),PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(7.9=100)
C2:
PF0078017=CNH=FE(74.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAAACCGGCTGAAGAAC
R:
TGAGCTCGATCTGGCAGACTT
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]