RnoEX0018975 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98425941-98429048:+
Coord C1 exon
chr13:98425941-98426157
Coord A exon
chr13:98426711-98426773
Coord C2 exon
chr13:98428455-98429048
Length
63 bp
Sequences
Splice sites
3' ss Seq
AATGTTTGTGTCTTAAACAGATC
3' ss Score
9.91
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCACAGCCTCCCAGCTCTCAGCACCTAGTGACAAATGTTCCATCCTGATGCTAGCCGACAGCGAGACTGAGAGGAGTAAGTGGGTGGGAGTGCTGAGTGAACTCCACAAGGTTCTGAAGAAAAACAAGTTCAGAGACCGCTCAGTGTATGTCCCCAAAGAGGCTTACGACAGCACTCTACCCCTCATTAAAACAACGCAGGCCGCGGCAATCATAG
Seq A exon
ATCATGAGCGGGTAGCTTTGGGAAATGAAGAAGGATTATTTGTTGTGCATGTCACTAAAGATG
Seq C2 exon
AGATTATTAGAGTTGGTGATAATAAGAAAATTCATCAGATTGAACTCATTCCAAGTGACCAGCTTGTTGCTGTGATCTCAGGCCGAAATCGCCACGTCCGACTTTTCCCTATGTCAGCTTTGGATGGGCGAGAGACGGATTTTTATAAACTGGCAGAGACTAAAGGGTGTCAAACCATAGCTGCTGGGAAGGTGCGCCATGGAGCTCTGTCCTGCCTGTGTGTGGCCATGAAAAGACAGGTCCTCTGCTATGAACTGTTCCAAAGCAAGACCAGGCACAGGAAGTTTAAGGAGATTCAAGTCCCATGTAATGTCCAGTGGATGGCCATCTTCAGTGAACATCTCTGTGTGGGATTCCAGTCAGGATTTCTCAGATACCCCCTGAATGGGGAAGGAAGTCCATGCAATATGCTCCATTCAAATGACCACACACTGGCATTCATTACACACCAACCAATGGATGCTATCTGTGCCGTTGAGATCTCCAACAAAGAGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-'56-55,'56-54,57-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(7.9=100)
C2:
PF0078017=CNH=FE(74.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCTTACGACAGCACTCT
R:
GGCCTGAGATCACAGCAACAA
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]