BtaEX0008078 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30728288-30731254:-
Coord C1 exon
chr16:30731038-30731254
Coord A exon
chr16:30730110-30730172
Coord C2 exon
chr16:30728288-30728881
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATATTTGTGTCTTGTATAGATC
3' ss Score
8.62
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCACAGCTTCCCAGCTCTCAGCATCTAGTAACAAATGTTCCATCCTGATGCTAGCTGATAGTGAAAATGAGAAGAGTAAGTGGGTGGGAGTACTGAGTGAATTGCACAAGATTTTGAAGAAAAACAAATTCAGAGACCGCTCAGTCTATGTTCCCAAAGAGGCTTATGACAGCACTCTGCCCCTCATTAAAACAACCCAGGCAGCTGCAATCATAG
Seq A exon
ATCATGAAAGAATAGCTTTGGGGAATGAAGAAGGGTTATTTGTTGTGCATGTCACCAAAGATG
Seq C2 exon
AAATTATTAGAGTTGGTGACAATAAGAAGATTCATCAGATAGAACTCATTCCAAATGATCAACTTGTTGCCGTGATCTCAGGACGAAATCGACACGTCCGACTTTTTCCTATGTCAGCTCTGGACGGGCGAGAGACTGATTTTTATAAGCTGGCAGAAACTAAAGGCTGTCAAACAATAACTTCTGGAAAAGTGCGTCATGGAGCTCTTACATGCTTGTGTGTGGCTATGAAAAGGCAGGTCCTCTGTTATGAACTATTTCAGAGCAAGACGCGTCACAGAAAATTTAAGGAAATTCAAGTCCCATACAACGTCCAGTGGATGGCAATCTTCAGTGAGCAACTCTGTGTGGGATTCCAGTCTGGATTTCTAAGATATCCCCTGAATGGAGAAGGAAGTCCATACAGTATGCTCCATTCAAATGACAATACACTCTCATTTATTGCACATCAACCAATGGATGCCATCTGTGCGGTTGAAATCTCCAGTAAAGAATACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-'41-54,'41-53,42-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(7.9=100)
C2:
PF0078017=CNH=FE(74.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGCAGCTGCAATCATAG
R:
CCGTCCAGAGCTGACATAGGA
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development