DreEX0020177 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8301361-8307198:+
Coord C1 exon
chr17:8301361-8301580
Coord A exon
chr17:8303667-8303729
Coord C2 exon
chr17:8306599-8307198
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCACTCATGTTTATCCGCAGATC
3' ss Score
11.42
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGACAGCATCACAGCTCTGCGCCTCCAGCAATAAAAAATGCTCCATTTTGATCCTGGCCGACAGCGATCAGGAAAGAACAAAGTGGGTCGGCCTTTTGAAGGAGCTGCACCGGCTCTTGAAGAAAAGCAAACTGAAAGAACGCTTTGTTTACGTCCCTAAAGAAGCATATGACTGCGCACTGCCTCTCATCAAAACCACACAGTCTGCTGCTATTATAG
Seq A exon
ATCATGAGAGGATTGCTCTGGGAAACGAGGAGGGGTTATACGTTATTCATGTTACCAAAGATG
Seq C2 exon
AAATTATCAAAGTAGGGGACAACAAAAAGGTTCATCAAATCGAACTGATCCCATCAGAGCAGTTGATTGCTGTGATATCCGGCCGAAATGGCCACGTGCGCTTATACCCAATGACGGCACTGGATGATCGCGATGTCGAATCCTACAAGATAGCCGAAACCAAAGGCTGCCAAACTCTCCTTTCTGGCACAATTAGACACGGATCTCTCACCTGTCTCTTTGTGGCCATGAAGAAACCCGACAAGGTGATCGTCTACGAGCTCAACAAAAGCAAAGCGCGTCATCGGAAGCTGCGGGAAATCCTGGTCCCGGGAAGCGTGCAGTGGATGGGGCTCCAGGGCGAGAAGCTTTGCGTTGGTTTTCAGTCTGGGTTTTTGCGCTACAGTCTTCAGGGCGATGGAGGCACCAGCAGCCTCCTCCATCCTGATGATCACACGCTGGGCTTCATTGAGCAGCTCGGGCTTGACTCTCTGTGTGCTGTGGAGATCTCCAGTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(7.9=100)
C2:
PF0078017=CNH=FE(74.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCACACAGTCTGCTGCT
R:
TATAAGCGCACGTGGCCATTT
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]