MmuEX6029634 @ mm10
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:180141342-180145000:+
Coord C1 exon
chr1:180141342-180141558
Coord A exon
chr1:180142277-180142339
Coord C2 exon
chr1:180144407-180145000
Length
63 bp
Sequences
Splice sites
3' ss Seq
TATGTTTGTGTCTTACATAGATC
3' ss Score
9.44
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCACAGCTTCCCAGCTCTCAGCACCTAGTAACAAATGTTCCATCCTGATGCTAGCAGACAGCGAGAATGAGAGGAGTAAGTGGGTGGGAGTGCTGAGTGAACTCCACAAGATTCTGAAGAAAAACAAGTTCAGAGACCGCTCAGTGTATGTCCCCAAGGAGGCGTACGACAGCACGCTACCCCTCATTAAGACAACGCAGGCCGCTGCAATCATAG
Seq A exon
ATCATGAACGGATAGCTTTGGGAAATGAAGAAGGATTATTTGTTGTGCATGTCACCAAAGATG
Seq C2 exon
AGATTGTTAGAGTTGGTGATAATAAGAAAATCCATCAGATCGAACTCATTCCAAGTGACCAGCTTGTCGCTGTGATCTCAGGCCGAAATCGCCACGTCCGACTTTTTCCTATGTCAGCCTTGGATGGGCGAGAGACGGATTTTTATAAACTGGCAGAGACTAAAGGGTGTCAGACCATAGCTGCTGGGAAAGTGCGCCACGGAGCTCTGTCCTGCCTGTGTGTGGCCATGAAGAGACAGGTCCTCTGCTATGAACTGTTCCAAAGCAAGACCAGGCACAGGAAGTTTAAGGAGATTCAAGTCCCATGTAATGTCCAGTGGATGGCCATCTTCAGTGAGCATCTCTGTGTGGGATTCCAGTCAGGATTTCTCAGATACCCCCTGAATGGAGAAGGAGGTCCATGCAATATGCTCCATTCAAATGACCATACACTGTCATTCATTTCACACCAACCAATGGACGCTCTCTGTGCAGTTGAGATCTCCAACAAAGAGTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'66-77,'66-74,73-77=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(7.9=100)
C2:
PF0078017=CNH=FE(74.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTAAGACAACGCAGGCCG
R:
AAAAGTCGGACGTGGCGATTT
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types