GgaEX0013461 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13320098-13322368:+
Coord C1 exon
chr3:13320098-13320314
Coord A exon
chr3:13321162-13321224
Coord C2 exon
chr3:13321775-13322368
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATTAATGTCATAGATC
3' ss Score
7.23
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCACAGCTTCCCAACTCTCTGCAACCAGTAATAAGTGTTCAATCCTGATTCTAACAGACGGTGAGAATGAAAAAAGCAAGTGGGTAGGAGTGCTGAATGAATTGCATAGGATCTTGAAGAAAAACAAACTCAAAGACCGCTCAGTCTATGTTCCCAAAGAAGCTTATGACAGCACCTTACCCCTCATCAAAACAACGCAGTCAGCAGCAATCATAG
Seq A exon
ATCATGAAAGAATAGCACTGGGGAATGAAGAAGGGTTATTTGTTGTGCATGTCACCAAAGATG
Seq C2 exon
AGATAATCCGTGTTGGTGATAATAAGAAGGTTCATCAGATTGAGCTTATCCCAAGCGAACAGCTCATTGCAGTAATCTCAGGACGAAACCGTCACGTGCGACTTTTCCCTATGACAGCCCTGGATGGAAGGGAGACTGAGTTTTATAAGTTGGCAGAAACAAAAGGCTGCCAGTCGATAGTTTCTGGACACGTGCGCCATGGAGCCCTTACATGCCTTTGTGTAGCTATGAAAAGGCAAGTCCTCTGTTATGAACTAAATCAGAGTAAGACACGTCACAAAAAGATCAAGGAGATCCAAGTCCAGGGGAACGTCCAGTGGATGTCGGTCTTCAGTGAGCGTCTTTGTGTGGGCTACCAGTCAGGTTTCTTAAAGCATCCCCTTCATGGAGAAGGCAGCCCATACAGTCTGCTCCATCCAGATGACCACACGCTATCGTTTATCTCACAGCAGCCAACTGATGCCATCTGTGCAGTCGAAATCTCAAATAAAGAATACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'33-41,'33-40,34-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(1.9=6.8)
A:
PF0078017=CNH=FE(7.9=100)
C2:
PF0078017=CNH=FE(74.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCAGTCAGCAGCAATCAT
R:
TAGGGAAAAGTCGCACGTGAC
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]