GgaEX1014031 @ galGal4
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49821344-49825182:-
Coord C1 exon
chr5:49824966-49825182
Coord A exon
chr5:49824515-49824577
Coord C2 exon
chr5:49821344-49821940
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTCCTGGTTTAGATC
3' ss Score
11.3
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTGACAGCTTCTCTCTTAGGTTTGCCTTCAAAGTCTTGTTCTCTGCTGATCCTGACAGAAAATGAGAATGAGAAGAGAAAGTGGGTTGGAATTCTAGAAGGGTTGCAGTCTATCCTGCACAAAAACAGACTGAAAAACCAGGTCGTGCATATTCCACAGGAAGCCTATGACAGTACACTGCCTCTTATTAAAGCGAGTTTAGCTGCTGCTATCGTAG
Seq A exon
ATCGAGATAGAATAGCAATTGGTTCAGAAGAAGGACTGTATGTGATAGAAGTGACCCGTGACG
Seq C2 exon
TGATTGTCCGCGCTGCTGACTGTAAGAAGGTGTACCAGATCGAGCTTGCTCCCAAAGAGAAAATCATCATCCTCATCTGTGGCCGGAACCATCACGTTCATCTTTTCCCCTGGGCCACTCTGGACGGATCAGAAGGAAGCTTTGACATTAAGCTTGCAGAAACTAAAGGCTGCCAATTGATTACAACTGGAACGCTAAAGAAGAGTTCTGCGACTTGTTTGTTTGTAGCTGTTAAACGGCAGGTTTTTTGCTATGAAATTCACAGAACTAAACCTTTCCACAAAAAATTCAGTGAAATTCAGGCTCCAGGAACTGTTCAGTGGATGACAGTGTTCAAGGACAAGCTCTGTGTTGGCTACCAGTCTGGGTTCTCTCTGTTGACCATCCAGGGAGATGGACAATCTATAAACCTGGTAAATCCTAATGACCCCTCACTTATGTTCCTCTCACAGCAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCAGTAATGAGGAGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(1.5=5.5)
A:
PF0078017=CNH=FE(8.6=100)
C2:
PF0078017=CNH=FE(74.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAAAACCAGGTCGTGCA
R:
GCAAGCTCGATCTGGTACACC
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]