BtaEX0008100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43681780-43683681:-
Coord C1 exon
chr29:43683619-43683681
Coord A exon
chr29:43682899-43683498
Coord C2 exon
chr29:43681780-43681877
Length
600 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCGCCAACCCCGCAGACA
3' ss Score
7.94
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
ACCAGGAACGGCTTGCTCTGGGCACCGAGGAAGGGCTGTTTGTGATCCATCTGCACAGTAACG
Seq A exon
ACATCTTCCAGGTGGGCGAGTGCCGGCGGGTGCAGCGGCTGGCCGTGAGCCCTGCTGCGGGCCTTCTGGTCGCGCTGTGTGGCCGAGGCCCCAGCGTGCGCCTCTTTGCCCTGGCAGAGCTGGAGAACGTGGAGGCAGCCAGCACCAAGATCCCCGAGTCTCGAGGCTGCCAGGCCCTGGCGGCCGGGCGCATCCTGCAGGCCCGCACCCCCGTGCTCTGTGTGGCGGTCAAGCGCCAGGTGCTCTGCTACCAGCTGGGCCCAGGTCCAGGGCCCTGGCAGCGCCGCATCCGTGAGCTGCAGGCACCAGCGCCCGTGCAGAGCCTGGGGCTCCTGGGCGATCGGCTGTGCGTGGGTGCGGCTGGCACCTTCGCCCTCTACCCACTGCTTAACGAGGCAGCGCCTTTAGCGCTAGGGGCCGGTCTTGTGCCTGAGGAGCTGCCCCCGTCCCGCGGGGGCCTGGGTGAGGCCCTGGGTGCCGTGGAGCTCAGCCTCAGTGAGTTCCTGCTGCTCTTCACCACCGCCGGGGTCTACGTGGACAGCGCCGGCCGCAAGTCTCGCATGCAAGAGCTGCTGTGGCCAGCAGTGCCCACGGGCTGGG
Seq C2 exon
GTTATGCGGCCCCCTACCTGACAGTGTTCAGCGAAAATGCCATCGATGTGTTTGATGTGAGGAGGGCAGAATGGGTCCAGACCGTGCCACTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.010 C2=0.061
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(7.9=100)
A:
PF0078017=CNH=FE(74.9=100)
C2:
PF0078017=CNH=PD(97.8=80.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development