RnoEX6006283 @ rn6
Exon Skipping
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221687951-221689745:+
Coord C1 exon
chr1:221687951-221688013
Coord A exon
chr1:221688109-221688708
Coord C2 exon
chr1:221689648-221689745
Length
600 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTGCCAACACCACAGACA
3' ss Score
5.68
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACCGAGAGCGTCTTGCCCTGGGCACTGAGGAGGGCTTGTTTGTGATCCATCTTCACAGCAATG
Seq A exon
ACATCTTCCAGGTGGGAGACTGCCGCAGGGTGCAGCGGTTGACCGTGAGCTCTGCCGCTGGCCTACTGGTCGTGCTCTGTGGCCGTGGTCCCAGTGTGCGCCTCTTCACCCTGTCTGAGCTGGAAAATGCAGAGGTGGCAGGTGCCAAGATCCCTGAATCCCGAGGCTGTCAGGCTTTGGTGGCTGGGAGCATCCTACAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAGCGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTACAAGCGCCAGCTCCCGTGCAGAGCCTGGGGTTGCTGGGTGATCGGCTCTGTGTGGGTGCCGCTGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCGCCCTTAGCGCTGGGAACCGGCCTGGTGGCTGAGGAGCTCCCCGCGTCCCGTGGGGGCCTGGGTGAGGCACTGGGTGCTGTGGAGCTCAGCCTCAGCGAGCTTCTGCTGCTCTTCGCCACTGCTGGCGTCTACGTGGATGGCGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGTGGCACCCACTGGCTGGG
Seq C2 exon
GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACTCCATTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTGCCACTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(7.9=100)
A:
PF0078017=CNH=FE(74.9=100)
C2:
PF0078017=CNH=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]