MmuEX6030963 @ mm10
Exon Skipping
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6320079-6321754:+
Coord C1 exon
chr19:6320079-6320141
Coord A exon
chr19:6320243-6320842
Coord C2 exon
chr19:6321657-6321754
Length
600 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCGCCAACACCGCAGACA
3' ss Score
5.43
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG
Seq A exon
ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG
Seq C2 exon
GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-'41-55,'41-53,49-55=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(7.9=100)
A:
PF0078017=CNH=FE(74.9=100)
C2:
PF0078017=CNH=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types