BtaEX0008184 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033248 | CDH3
Description
Bos taurus cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001244605]
Coordinates
chr18:36129466-36134002:+
Coord C1 exon
chr18:36129466-36129611
Coord A exon
chr18:36130392-36130616
Coord C2 exon
chr18:36133796-36134002
Length
225 bp
Sequences
Splice sites
3' ss Seq
CATATGTGTGATTTGAACAGGGA
3' ss Score
6.45
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TTACCACATCCTGAGAGACCCAGCAGGGTGGCTAGCGATGGACCCAGACAGTGGACAAGTCACTGCCGCAGGGGTCTTGGACCGTGAGGATGAGCAGTTTGTGAGAAACAACATCTACGAAGTCATGGTCTTGGCCACAGATGATG
Seq A exon
GGAGCCCTCCCACCACTGGCACAGGGACCCTCCTGCTAACACTGATGGACATCAATGACCACGGTCCGGTCCCCGAGCCCCGTCAGATCACCATCTGCAACCAAAGCCCTGTGCCCCAGGTGCTAAACATCACAGACAAGGACTTGTCCCCCCACACTGCCCCTTTCCAGGCCCAACTCACACATGACTCGGACGTCTATTGGACAGCAGAAGTCAACGAGAAAG
Seq C2 exon
GAGACGCAGTAGCCTTGTCCCTGAAGAAGTTCCTAAAGCAAGGCGAATACGATGTACACCTTTCCCTGTCCGACCACGGCAACAAGGAACAGCTGACAGTGATCAGAGCCACCGTGTGTGACTGCCACGGCAACATGGTGACCTGCCGGGACCCCTGGACGTGGGGTTTCCTCCTCCCCATCCTGGGTGCTGCCCTGGCTCTGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033248_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=0.329 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(54.5=63.2)
C2:
PF0002812=Cadherin=PD(44.3=55.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCGATGGACCCAGACAGT
R:
CAGGATGGGGAGGAGGAAACC
Band lengths:
300-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development