Special

GgaEX6009514 @ galGal3

Exon Skipping

Gene
ENSGALG00000000608 | F1NUS5_CHICK
Description
NA
Coordinates
chr11:20832852-20833723:+
Coord C1 exon
chr11:20832852-20832994
Coord A exon
chr11:20833075-20833299
Coord C2 exon
chr11:20833502-20833723
Length
225 bp
Sequences
Splice sites
3' ss Seq
GCTAATGTCTGGCTTTGTAGGGA
3' ss Score
5.56
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTACCGCATGGGCAGCGACCCAGCAGGCTGGCTGTACATTCACCCCGAGAATGGCATTGTCACGGCCACCCAGCCACTGGACCGCGAGTCGGTGCACGCCATCAACAGTACATACAAGGCCATCATCCTGGCTGTGGACAATG
Seq A exon
GGATACCGGATACCACCGGTACGGGGACGCTGCTGCTGCTCCTCCAGGATGTGAATGACAACGGGCCCACCCCAGAGCCCCGGTCCTTCGAGATCTGCAGCCGGCAGCCTGAGAAGCAGATACTGAGCATTGTGGACAAGGACCTGCCCCCACATACCTACCCCTTCAAGGCAGCACTGGAGCATGGTTCCAGCAACAACTGGACTGTTGAGATAAGGGGCCAAG
Seq C2 exon
ATGAGCTGGCCATGGGCCTGAAAAAGGAGCTGGAGCCGGGCGAGTACAATATCTTTGTGAAGCTGACGGACAGCCAGGGCAAGGCACAGGTGACGCAGGTCAAAGCCCAGGTGTGTGAGTGTGAAGGGACAGCCAAGAACTGCGAGCGGAGGTCGTACATCGTCGGTGGGCTGGGTGTCCCCGCCATCCTGGGCATCATGGGGGGAATCCTGGCCCTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.122 A=0.237 C2=0.000
Domain overlap (PFAM):

C1:
PF0002812=Cadherin=FE(50.5=100)
A:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(55.2=63.2)
C2:
PF0002812=Cadherin=PD(43.7=50.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGGCTGTACATTCACC
R:
CAGCCCACCGACGATGTAC
Band lengths:
293-518
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]