RnoEX0019101 @ rn6
Exon Skipping
Gene
ENSRNOG00000020151 | Cdh1
Description
cadherin 1 [Source:RGD Symbol;Acc:69279]
Coordinates
chr19:38829783-38832860:+
Coord C1 exon
chr19:38829783-38829928
Coord A exon
chr19:38832144-38832368
Coord C2 exon
chr19:38832633-38832860
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCTGTTTTCTCTTAGGTT
3' ss Score
12.53
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GTATCGGATTTGGAGGGACACTGCCAATTGGCTGGAGATTAACCCAGAGACTGGGGTCATTTCCACTCGGGCTGAGATGGACAGAGAAGATTCGGAGCATGTGAAGAACAGCACGTATACAGCTCTCATCATTGCCACAGATGATG
Seq A exon
GTTCACCCATTGCCACTGGCACAGGGACTCTTCTCCTGGTCCTGTCAGACGTCAACGACAATGCTCCCATCCCAGAACCTCGAAATATGCAGTTCTGCCAGAGAAACCCGAAGCCCCATGTCATCACCATCTTGGATCCAGACCTTCCCCCAAACACATCCCCCTTCACTGCAGAGCTCACCCATGGGGCCAGCGTCAACTGGACCATTGAGTACAATGACGCAG
Seq C2 exon
AACAAGAATCTCTCATTTTGCAACCAAGAAAGGACTTAGAGATTGGCGAATACAAAATCAATCTCAAGCTCTCGGATAACCAGAATAAAGACCAGGTGACCACGTTGGAGGTCCACGTGTGTGACTGTGAAGGGACCGTCAACAACTGCATGAAGGCGATCTCCCTGGAAGCAGGATTACAAGTTCCCGCCATCCTTGGAATCCTGGGAGGGATCCTGGCCCTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020151-'18-13,'18-12,19-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.263 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.7=18.4),PF0002812=Cadherin=PU(53.9=63.2)
C2:
PF0002812=Cadherin=PD(44.9=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGGGACACTGCCAATTG
R:
TTCCAGGGAGATCGCCTTCAT
Band lengths:
307-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]