BtaEX6081138 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015991 | E-CADHERIN
Description
Bos taurus cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002763]
Coordinates
chr18:36236754-36239900:+
Coord C1 exon
chr18:36236754-36236899
Coord A exon
chr18:36239123-36239347
Coord C2 exon
chr18:36239670-36239900
Length
225 bp
Sequences
Splice sites
3' ss Seq
TGACATTTCCTCTGTACTAGGTT
3' ss Score
8.7
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTATCGGATTTGGAGGGACACTGCCAACTGGCTGGAGATTAATCCAGAAACGGGTGCCATTTCCACTCGGGCTGAGTTGGACAGAGAGGATGTCGATCATGTGAAGAACAGCACGTACACGGCCCTCATTATAGCCACTGACAATG
Seq A exon
GTTCTCCACCTGCCACTGGGACAGGCACCCTGCTCTTGTTCCTCGATGATGTGAATGACAATGGCCCCGTACCAGAACCCCGGACCATGGACTTCTGCCAGAGGAATCCTGAGCCTCACATCATCAACATCAATGATCCTGATCTCCCTCCGAACACCTCCCCCTTTACAGCAGAACTGACACATGGGGCGAGTGTCAATTGGACCATTGAGTACAATGACCAAG
Seq C2 exon
AACGTGAGTCTCTGATTTTGAAGCCAAAGAAAACCTTAGAGCTGGGTGACCACAAAATCAATCTCAAGCTCATAGACAACCAGAACAAAGACCAGGTGACCACACTTGATGTGCACGTGTGTGACTGTGATGGGATCGTCAGCAACTGCAGGAAGGCCACGGCCTTTGCTGAAGCAGGATTGCAAGTTCCCGCCATCCTGGGGATCCTCGGAGGCATCCTTGCTTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015991-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=0.566 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.7=18.4),PF0002812=Cadherin=PU(53.9=63.2)
C2:
PF0002812=Cadherin=PD(44.9=51.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGAGGGACACTGCCAAC
R:
CTTCCTGCAGTTGCTGACGAT
Band lengths:
294-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]