DreEX6064231 @ danRer10
Exon Skipping
Gene
ENSDARG00000058546 | si:dkey-30c15.12
Description
si:dkey-30c15.12 [Source:ZFIN;Acc:ZDB-GENE-060503-920]
Coordinates
chr18:7452963-7455791:-
Coord C1 exon
chr18:7455649-7455791
Coord A exon
chr18:7453261-7453485
Coord C2 exon
chr18:7452963-7453178
Length
225 bp
Sequences
Splice sites
3' ss Seq
TAGGGTTTTTTTCCCTGTAGATG
3' ss Score
8.4
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GTATAAGCTGAGAGGAGACATTGCAAACTGGCTGGAGATCACAGAAGACACTGGACACATCACAATCAGCAGTTCGCTGGACAGAGAAGCTAAGTTCATAAGAGATGGGCAGTACAAGGTCTTAGTACTCGCATTCGATGATG
Seq A exon
ATGATGAACCGGCCACAGGCACAGGCACATTCATGATTAAGCTGTTGGATGTTAATGACAACCCTCCTGTTTTGGAGCAGCACAAAGTCCAGATGTGTTCAACAGAGCCAAAACCTGTCCGTCTGACCATCACAGATGCAGATGAGCCAGAAAACGGCCCACCGTTTACCACAGAGCTCCATGAAGAGTTTAAAAGCAACTGGACGATCTCCAGCGACTCCAACA
Seq C2 exon
GCAGTGTGTTGTTGAGTTCACTCAGACCCCTGGCTGTTGGTGAACACAGCCTGTGGTTGCGTCTGTCCGACTCTAAGCTGTTATTTCAGGACAGTTCCCTCATAGTGAATGTGTGTGACTGTAAAGGAGACGATGGTACCTGCTCCAGCCCTCGATATGCTGCTAGTATCAGCACTCCACTCATCTTCGTGTTTGTAGCTGTCTTTTGCCTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058546-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.373 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(49.5=100)
A:
PF0002812=Cadherin=PD(15.8=20.0),PF0002812=Cadherin=PU(53.5=61.3)
C2:
PF0002812=Cadherin=PD(44.2=52.8),PF145751=EphA2_TM=PU(22.2=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCAAACTGGCTGGAGA
R:
ACTAGCAGCATATCGAGGGCT
Band lengths:
293-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]