MmuEX6000441 @ mm10
Exon Skipping
Gene
ENSMUSG00000044322 | Dsc1
Description
desmocollin 1 [Source:MGI Symbol;Acc:MGI:109173]
Coordinates
chr18:20088301-20094659:-
Coord C1 exon
chr18:20094517-20094659
Coord A exon
chr18:20089538-20089750
Coord C2 exon
chr18:20088301-20088540
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTTATCTATCCTAGCTG
3' ss Score
7.06
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTATGAGATGGTAGGAGATGAAGATAATTGGTTTGAGATTAACAAAATCACCGGAGACTTGAGAACTGTGAAAGTACTGGACAGAGAGTCGAAGTTTGTGAAAAACAACCAGTACAATATTTCAGTAGTGGCGACAGATACAG
Seq A exon
CTGGCCGATCTTGCACAGGAACACTGGTAGTTCTTCTGGAAGATTTTAATGACCACCCACCACAGATTGACAAGGAAGTGACCATTTGTCAGCAGGAGAAGGATTTTGCTGTTTTGGAACCTATAGATTTAGATGGGCCAGATAATGGTCCACCTTTTCAGTTCCTTCTGGATAATTCTTCCAGCAAACTTTGGACTCTAGAATCACAGGATG
Seq C2 exon
GTAAACGTGCCATTCTTCGTCAACGACACAATCTTAATTATAACTATTATTCTGTGCCAATCCAAATACAAGACAGGCATGGTTTTTCCGCAAAACATGTATTATCAGTGCGAGTGTGTGACTGTACAACTCCAACAGAATGTAGAATGGCTGTTAAGGAAGAGAGGGATGCTAAACCAAATATAATCCTTGGGAAATGGGCCATTCTTGCCATGGTCCTGGGCTCTGCATTGCTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044322-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.056 C2=0.012
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=18.1),PF0002812=Cadherin=PU(54.0=65.3)
C2:
PF0002812=Cadherin=PD(44.8=48.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAGACTTGAGAACTGTGA
R:
AGAATGGCCCATTTCCCAAGG
Band lengths:
302-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types