GgaEX6021413 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJD7]
Coordinates
chr2:105638430-105641016:-
Coord C1 exon
chr2:105640874-105641016
Coord A exon
chr2:105639239-105639454
Coord C2 exon
chr2:105638430-105638654
Length
216 bp
Sequences
Splice sites
3' ss Seq
CAATTATTTTTATCTCGTAGATG
3' ss Score
8.55
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CTACAAAATACCACCTGGACAGTGTAACTGGGTCAATATTGATGAAAAATCAGGTGAAGTCAGAACTGTTAGAGTCTTGGACCGAGATCTAGGAGAAGTGAAACGAGGTCAATGCAATATCACAGTCCTCGCAATAGACAGAA
Seq A exon
ATGGCAAAACAGGCACTGGAACCCTTCAAGTTGTCATCCAGCGTTGCGACAGGAATTATCTACGGATTCCTACAACTCAGTATACAATGTGCAGAGACAGAAAACCGATCTGTCTCAGTGTAGGGGATGGTGATGACACTTCTTACAGCATGCCCTTAGTCTATCGCGTGACTGACCGTAGCCTGGGTTCCATGTGGAAGATAACACAGCACAATG
Seq C2 exon
AAAAGTCTGTGTATCTTTCACCAGTGGGTGATATTCCATTTGGAACATACACTATTCCTATCAGTGTGTCTGATAGTTCAGGAAGGCGGGGAATCAGTGAAATATCAGTTAACTACTGTGATTGTGTTACTCCAAGTGATTGTGGATCTCCTCGTAGTGCTGGGAGTGTTACTCTTGGTGTATGGGCCATCCTTGCAATGATCTTGGGATCACTGCTGTTGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015140-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCTGGACAGTGTAACTG
R:
CCAGCACTACGAGGAGATCCA
Band lengths:
297-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]