MmuEX6000441 @ mm9
Exon Skipping
Gene
ENSMUSG00000044322 | Dsc1
Description
desmocollin 1 [Source:MGI Symbol;Acc:MGI:109173]
Coordinates
chr18:20246802-20253160:-
Coord C1 exon
chr18:20253018-20253160
Coord A exon
chr18:20248039-20248251
Coord C2 exon
chr18:20246802-20247041
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTTATCTATCCTAGCTG
3' ss Score
7.06
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTATGAGATGGTAGGAGATGAAGATAATTGGTTTGAGATTAACAAAATCACCGGAGACTTGAGAACTGTGAAAGTACTGGACAGAGAGTCGAAGTTTGTGAAAAACAACCAGTACAATATTTCAGTAGTGGCGACAGATACAG
Seq A exon
CTGGCCGATCTTGCACAGGAACACTGGTAGTTCTTCTGGAAGATTTTAATGACCACCCACCACAGATTGACAAGGAAGTGACCATTTGTCAGCAGGAGAAGGATTTTGCTGTTTTGGAACCTATAGATTTAGATGGGCCAGATAATGGTCCACCTTTTCAGTTCCTTCTGGATAATTCTTCCAGCAAACTTTGGACTCTAGAATCACAGGATG
Seq C2 exon
GTAAACGTGCCATTCTTCGTCAACGACACAATCTTAATTATAACTATTATTCTGTGCCAATCCAAATACAAGACAGGCATGGTTTTTCCGCAAAACATGTATTATCAGTGCGAGTGTGTGACTGTACAACTCCAACAGAATGTAGAATGGCTGTTAAGGAAGAGAGGGATGCTAAACCAAATATAATCCTTGGGAAATGGGCCATTCTTGCCATGGTCCTGGGCTCTGCATTGCTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044322-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.056 C2=0.012
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=18.1),PF0002812=Cadherin=PU(54.0=65.3)
C2:
PF0002812=Cadherin=PD(44.8=48.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAGACTTGAGAACTGTGA
R:
AGAATGGCCCATTTCCCAAGG
Band lengths:
302-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: