BtaEX6091715 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019876 | DSC1
Description
Bos taurus desmocollin 1 (DSC1), mRNA. [Source:RefSeq mRNA;Acc:NM_174044]
Coordinates
chr24:26304850-26313468:+
Coord C1 exon
chr24:26304850-26304992
Coord A exon
chr24:26312673-26312888
Coord C2 exon
chr24:26313226-26313468
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTTATTTTTCTTAGATG
3' ss Score
8.65
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
GTATAAGAAGATACAAGATGAAGATAACTGGTTTGAAATTAATGAATACACTGGTGACTTGAAAACTGTAAAAGTGCTAGATAGAGAATCAACATTTGTAAAAAACAACCAATACAATGTTTCTGTGATTGCGTTCGATGCAG
Seq A exon
ATGGCAGATCTTGCACTGGAACGTTAGTAGTTTTTTTGGAAGATAAAAATGACCACCCACCGCAGATAAAACAAGAAGAACTGACAATTTGCCGGCATGATAAGGATTATGTTGTCCTCGAACCTACAGATCAAGATGGACCTGACAATGGGCCACCTTTTCAATTCATTCTTGATAATTCTGCCAGCAAACTTTGGACAGTAGAGACAAGGGATG
Seq C2 exon
GTAAAACTGCCATTCTTCGGGGGCGGCAAGATCTTGATTATGACTATTACACTGTTCCTATCCAAATAAAAGACAGACATGGTGCTTCTGCAACACACATATTACCAGTGAGAGTATGTGATTGTACAATTCCATCCGAATGTAGAATGCCTAGTAAACTTTCGAGAGAGGCAGCACTCGCAAATGTATTCCTTGGAAAATGGGCAATTCTTGCCATGGTGTTGGGTTCTGTATTGTTGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019876-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.205 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=17.8),PF0002812=Cadherin=PU(51.2=57.5)
C2:
PF0002812=Cadherin=PD(47.6=47.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGTGACTTGAAAACTGT
R:
CCAAGGAATACATTTGCGAGTGC
Band lengths:
292-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]