DreEX6043949 @ danRer10
Exon Skipping
Gene
ENSDARG00000039677 | dsc2l
Description
desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
Coordinates
chr20:7280207-7284094:-
Coord C1 exon
chr20:7283952-7284094
Coord A exon
chr20:7281777-7281998
Coord C2 exon
chr20:7280207-7280443
Length
222 bp
Sequences
Splice sites
3' ss Seq
TGAAATCTGTCTCTCCTCAGGCA
3' ss Score
10.39
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTACTATAAGTTGACTGACCCAGGCAATTGGATCACTGTGGTGGAGAGCACTGGAGAACTGAAAGTAGCCAATACTATAGACAGAGAATCCTCTTTGGTTCATAACGACACCTACAACATCACCATAAAAGCAGTGGATGAGA
Seq A exon
GCAAGAAGACTGGAAACGGTGTGGTGATTCTCCAGATTGAAGATGTGAACGACAACATACCTGTGATCCAGAGACCTGACCTGAACATGTGTAATAGGGGCGATGCAGTGAGCTCGGTTTTGGTTGAAGCTGTGGACCAGGACAAGCCACCGTACTCCACTCCCTTCATTTTTGAACTCGGAGCAGAGCAAGAAGGGAAGTGGAAACTGAAGGATATTACAG
Seq C2 exon
ATTCGTCAGTGGTACTTCAGCAGGTGGAGCCGATGCCCAACGGCATGTACACTGTCCCCATCACAGTGAAGGATCTGCAAGGAACTGGAAAGGAGCAGATAGTGAATGTGCGAGTGTGCTCCTGTCAGAGGGAGGACAGTGGCGTGGGGATATGTGGAGCTCGCAGTGCTTCTGTCTCTTTGGGCAATTACGGCATCCTTGCTTTAGTTCTCTCTGGCCTGCTGCTGCTGCTGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039677-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(52.2=100)
A:
PF0002812=Cadherin=PD(14.1=17.3),PF0002812=Cadherin=PU(53.5=61.3)
C2:
PF0002812=Cadherin=PD(45.3=48.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGCAATTGGATCACTGT
R:
CACTGCGAGCTCCACATATCC
Band lengths:
293-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]