BtaEX6091742 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015238 | DSC3
Description
Bos taurus desmocollin 3 (DSC3), mRNA. [Source:RefSeq mRNA;Acc:NM_001178103]
Coordinates
chr24:26428892-26433714:+
Coord C1 exon
chr24:26428892-26429034
Coord A exon
chr24:26430691-26430915
Coord C2 exon
chr24:26433490-26433714
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCTTTCTTCCTAGATG
3' ss Score
11.81
5' ss Seq
ATGGTATTT
5' ss Score
3.85
Exon sequences
Seq C1 exon
GTACAAAATATTGCATGATCCTAAAGAGTGGATCACCGTTAATGAAGGTTCGGGCTCATTAGAGACTTACAAAACTTTGGACAGGGAGGTTATAACTCCCAAAAATGATTTGTATAATATTACAGTCCTGGCAATAGATCAAG
Seq A exon
ATGGTAGATCATGTACTGGAACCCTCGCAGTTAGCATTGAAGATGTGAATGATAACCCACCAGAAATACTTCAAGATTATCTAGTTATTTGCAAAGGAAACATGGACTATGTTGACATTTCGGCTATTGATCATGACAGTTCCATCAACGGTGCTCCATTTTACTTCAGCTTGGCAAACACTTCTCCAGAAATCAACAGACTATGGACGATCACCAGAGTTAATG
Seq C2 exon
ATACAGCTGCCCGTCTTGCATATCAGAAAAATGCCCAATTTCAAGAATATTTCATTCCTGTTGCTGTAAAAGACAGAGCAGGGCTATCTGCAACAAAAACCTTGAGAGTGAACCTCTGTGATTGTACTAACCCCGTTCAATGCCGGGCTGCTGCACGGAGTGCGGACGTGATACTTGGCAAATGGGCGATCCTTGCCATACTTCTGGGCATAGCACTACTTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015238-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=17.1),PF0002812=Cadherin=PU(51.2=55.3)
C2:
PF0002812=Cadherin=PD(47.6=51.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTTAATGAAGGTTCGGGC
R:
GGATCGCCCATTTGCCAAGTA
Band lengths:
301-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]