MmuEX6000418 @ mm10
Exon Skipping
Gene
ENSMUSG00000059898 | Dsc3
Description
desmocollin 3 [Source:MGI Symbol;Acc:MGI:1194993]
Coordinates
chr18:19968219-19973926:-
Coord C1 exon
chr18:19973784-19973926
Coord A exon
chr18:19971378-19971602
Coord C2 exon
chr18:19968219-19968443
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTTTCCCTTCTCAGAGG
3' ss Score
10.72
5' ss Seq
ATGGTATTA
5' ss Score
2.15
Exon sequences
Seq C1 exon
GTACAAAAAATTGCAGGATCCTAAAGACTGGGTCAGCATTGAAGAAGTTTCGGGGTTGCTTACCATATCAAAAACCCTAGACAGAGAAATAATGGCTCCAAGAAATGACATGTACAATATTACAGTCATGGCAATTGACCAAG
Seq A exon
AGGGTAAATCATGCACAGGAACACTTGCAGTGAACATCGAGGATGTGAATGACAACGCACCAGAGATAATTCAAGATTATATTGTTATCTGTAAGCCAAAGATGGGGTACACGGACATTTCAGCTGTGGATCCTGATGAACCTATCCATGGCCCTCCCTTTCAGTTCAACTTGGCAAACACTTCTCCAGAAGTCAACAGAATCTGGACCCTCAACCAAGTTAATG
Seq C2 exon
ATACAGCTGCTCGCCTGTCCTATCAGAAAACTGCGGATGTTCAAATATACAACGTTCCTGTTACTGTAAAAGACAGAGCAGGCCAATCTGCAACCAAAATCTTGAGAGTTAACCTGTGTGATTGTACTCATCCCAGCCAATGTCCGCTCAGATCAAGGAGTGCAGGAATTACCCTGGGAAAGTGGGCCATCCTTGCCATCTTGCTGGGCATTGCTCTGCTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059898-'10-14,'10-13,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=17.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGATCCTAAAGACTGGGT
R:
CTGCACTCCTTGATCTGAGCG
Band lengths:
297-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types