MmuEX6000418 @ mm9
Exon Skipping
Gene
ENSMUSG00000059898 | Dsc3
Description
desmocollin 3 [Source:MGI Symbol;Acc:MGI:1194993]
Coordinates
chr18:20126720-20132427:-
Coord C1 exon
chr18:20132285-20132427
Coord A exon
chr18:20129879-20130103
Coord C2 exon
chr18:20126720-20126944
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTTTCCCTTCTCAGAGG
3' ss Score
10.72
5' ss Seq
ATGGTATTA
5' ss Score
2.15
Exon sequences
Seq C1 exon
GTACAAAAAATTGCAGGATCCTAAAGACTGGGTCAGCATTGAAGAAGTTTCGGGGTTGCTTACCATATCAAAAACCCTAGACAGAGAAATAATGGCTCCAAGAAATGACATGTACAATATTACAGTCATGGCAATTGACCAAG
Seq A exon
AGGGTAAATCATGCACAGGAACACTTGCAGTGAACATCGAGGATGTGAATGACAACGCACCAGAGATAATTCAAGATTATATTGTTATCTGTAAGCCAAAGATGGGGTACACGGACATTTCAGCTGTGGATCCTGATGAACCTATCCATGGCCCTCCCTTTCAGTTCAACTTGGCAAACACTTCTCCAGAAGTCAACAGAATCTGGACCCTCAACCAAGTTAATG
Seq C2 exon
ATACAGCTGCTCGCCTGTCCTATCAGAAAACTGCGGATGTTCAAATATACAACGTTCCTGTTACTGTAAAAGACAGAGCAGGCCAATCTGCAACCAAAATCTTGAGAGTTAACCTGTGTGATTGTACTCATCCCAGCCAATGTCCGCTCAGATCAAGGAGTGCAGGAATTACCCTGGGAAAGTGGGCCATCCTTGCCATCTTGCTGGGCATTGCTCTGCTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059898-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=17.1),PF0002812=Cadherin=PU(51.2=55.3)
C2:
PF0002812=Cadherin=PD(47.6=51.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGATCCTAAAGACTGGGT
R:
CTGCACTCCTTGATCTGAGCG
Band lengths:
297-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: