RnoEX6058139 @ rn6
Exon Skipping
Gene
ENSRNOG00000017159 | Dsc3
Description
desmocollin 3 [Source:RGD Symbol;Acc:1311782]
Coordinates
chr18:11760856-11765573:-
Coord C1 exon
chr18:11765431-11765573
Coord A exon
chr18:11762966-11763190
Coord C2 exon
chr18:11760856-11761080
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTTTCCCTTCTCAGAGG
3' ss Score
10.72
5' ss Seq
ATGGTATTC
5' ss Score
2.04
Exon sequences
Seq C1 exon
GTACAAAAAATTGCAGGATCCTAAAGACTGGGTCAGCATTGAAGAAGTTTCAGGATCACTCACCATATCAAAAATCCTGGACAGAGAAATCATGGCTCCAAGAAATGACCTATACAATATTACAGTCATGGCAATTGACCAAG
Seq A exon
AGGGTAGATCATGCACAGGGACGCTTGCAGTGAACATTGAGGATATGAATGACAACGCACCAGAGATAATTCAAGATGACATTGTCATCTGCAAGCCAAGGATGGGTTATACAGACATTTCAGCTGTGGATCCTGATGAACCTATTCACGGCCCTCCCTTCCAGTTCGCCTTGGCAAGCTCTTCTCCAGAAGTCAACAGAATCTGGACCCTCAACCAAGTTAATG
Seq C2 exon
ATACAGCTGCCCGCCTGTCCTATCAGAAAACCGCGGATGTTCAGATATACTCCGTTCCTGTAACTGTAACAGACAGAGCAGGCCAATCTGCGACCAAGATCTTGAGAGTTAACCTGTGCGATTGTACTCACCCCAGCCAGTGTCTGCTCAGATCAAGAAGAGCGGGGATCACCCTGGGGAAGTGGGCAATCCTTGCCATCTTGCTGGGCATCGCTCTGCTATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017159-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=17.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGATCCTAAAGACTGGGT
R:
CCCGCTCTTCTTGATCTGAGC
Band lengths:
298-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]