GgaEX6021413 @ galGal3
Exon Skipping
Gene
ENSGALG00000015140 | F1NJD7_CHICK
Description
NA
Coordinates
chr2:109113591-109116177:-
Coord C1 exon
chr2:109116035-109116177
Coord A exon
chr2:109114400-109114615
Coord C2 exon
chr2:109113591-109113815
Length
216 bp
Sequences
Splice sites
3' ss Seq
CAATTATTTTTATCTCGTAGATG
3' ss Score
8.55
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CTACAAAATACCACCTGGACAGTGTAACTGGGTCAATATTGATGAAAAATCAGGTGAAGTCAGAACTGTTAGAGTCTTGGACCGAGATCTAGGAGAAGTGAAACGAGGTCAATGCAATATCACAGTCCTCGCAATAGACAGAA
Seq A exon
ATGGCAAAACAGGCACTGGAACCCTTCAAGTTGTCATCCAGCGTTGCGACAGGAATTATCTACGGATTCCTACAACTCAGTATACAATGTGCAGAGACAGAAAACCGATCTGTCTCAGTGTAGGGGATGGTGATGACACTTCTTACAGCATGCCCTTAGTCTATCGCGTGACTGACCGTAGCCTGGGTTCCATGTGGAAGATAACACAGCACAATG
Seq C2 exon
AAAAGTCTGTGTATCTTTCACCAGTGGGTGATATTCCATTTGGAACATACACTATTCCTATCAGTGTGTCTGATAGTTCAGGAAGGCGGGGAATCAGTGAAATATCAGTTAACTACTGTGATTGTGTTACTCCAAGTGATTGTGGATCTCCTCGTAGTGCTGGGAGTGTTACTCTTGGTGTATGGGCCATCCTTGCAATGATCTTGGGATCACTGCTGTTGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015140-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(14.0=17.8)
C2:
PF072046=Orthoreo_P10=PU(60.4=72.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCTGGACAGTGTAACTG
R:
CCAGCACTACGAGGAGATCCA
Band lengths:
297-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]