GgaEX6009514 @ galGal4
Exon Skipping
Gene
ENSGALG00000000608 | CDH1
Description
cadherin-1 precursor [Source:RefSeq peptide;Acc:NP_001034347]
Coordinates
chr11:18323663-18324534:+
Coord C1 exon
chr11:18323663-18323805
Coord A exon
chr11:18323886-18324110
Coord C2 exon
chr11:18324313-18324534
Length
225 bp
Sequences
Splice sites
3' ss Seq
GCTAATGTCTGGCTTTGTAGGGA
3' ss Score
5.56
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTACCGCATGGGCAGCGACCCAGCAGGCTGGCTGTACATTCACCCCGAGAATGGCATTGTCACGGCCACCCAGCCACTGGACCGCGAGTCGGTGCACGCCATCAACAGTACATACAAGGCCATCATCCTGGCTGTGGACAATG
Seq A exon
GGATACCGGATACCACCGGTACGGGGACGCTGCTGCTGCTCCTCCAGGATGTGAATGACAACGGGCCCACCCCAGAGCCCCGGTCCTTCGAGATCTGCAGCCGGCAGCCTGAGAAGCAGATACTGAGCATTGTGGACAAGGACCTGCCCCCACATACCTACCCCTTCAAGGCAGCACTGGAGCATGGTTCCAGCAACAACTGGACTGTTGAGATAAGGGGCCAAG
Seq C2 exon
ATGAGCTGGCCATGGGCCTGAAAAAGGAGCTGGAGCCGGGCGAGTACAATATCTTTGTGAAGCTGACGGACAGCCAGGGCAAGGCACAGGTGACGCAGGTCAAAGCCCAGGTGTGTGAGTGTGAAGGGACAGCCAAGAACTGCGAGCGGAGGTCGTACATCGTCGGTGGGCTGGGTGTCCCCGCCATCCTGGGCATCCTGGGGGGAATCCTGGCCCTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'16-17,'16-15,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.237 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(50.5=100)
A:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(55.2=63.2)
C2:
PF0002812=Cadherin=PD(43.7=50.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGGCTGTACATTCACC
R:
CAGCCCACCGACGATGTAC
Band lengths:
293-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]