RnoEX0019216 @ rn6
Exon Skipping
Gene
ENSRNOG00000020129 | Cdh3
Description
cadherin 3 [Source:RGD Symbol;Acc:621089]
Coordinates
chr19:38705806-38709835:+
Coord C1 exon
chr19:38705806-38705951
Coord A exon
chr19:38706871-38707095
Coord C2 exon
chr19:38709626-38709835
Length
225 bp
Sequences
Splice sites
3' ss Seq
GTATATGTAATTGTAAACAGGAA
3' ss Score
6.04
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTACAGCATCTTGAGAGACCCAGCCAGCTGGCTTGCTGTGGACCCGGACAGTGGTCAGATAACGGCTGCAGGCATCTTAGATCGTGAGGACGAGCAGTTTGTGAAAAACGACATCTACGAAGTCATGGTGTTGGCCACAGACAATG
Seq A exon
GAAACCCTCCCACCACCGGCACTGGGACCCTCCTGCTAACACTTACTGACATCAATGACCATGGCCCAATCCCTGAACCTCGTCAGATCATCATCTGTAACCAAAGCCCCGTGCCTCAAGTGCTGAACATCACAGACAAGGACCTGTCCCCCAACTCCTCCCCTTTCCAGGCCCAGCTCACACATGATTCAGATATCTACTGGATGGCAGAAGTCAGCGAGAAAG
Seq C2 exon
GAGACACCGTGGCCTTGTCCCTGAAGAAGTTCCTGAAGCAAGACACATATGACTTGCACCTTTCTTTGTCTGACCATGGCAACCGGGAACAGCTAACCATGATCAGGGCCACTGTGTGTGACTGCCACGGCCAGGTGTTGAATGACTGCCCCAGACCCTGGAAAGGTGGCTTCATCCTCCCCGTCCTGGGTGCTGTCCTGGCTCTACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020129-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.303 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(54.5=63.2)
C2:
PF0002812=Cadherin=PD(44.3=54.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTTGAGAGACCCAGC
R:
GGTCTGGGGCAGTCATTCAAC
Band lengths:
300-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]