BtaEX0008543 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62651781-62661158:+
Coord C1 exon
chr16:62651781-62652403
Coord A exon
chr16:62656535-62656648
Coord C2 exon
chr16:62661045-62661158
Length
114 bp
Sequences
Splice sites
3' ss Seq
TATTGTTGGTTATATATTAGGCT
3' ss Score
3.28
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TCGGAATATACTTTGTTGTGATTTTGAGAGCTCCCAATCATCTGCCGTTGATGATACAGTTGTTAGGTTTTTAAATGATCGACCAACAATTGATGCATTGCAAAATTCTGAATGTTTGATTAAGGTGGCAGCTGCCATGAGAAGTGATGAAGAAAAACCTAATAGAACAAAAGGAAATGAGAACACTTTGAAGTCTTCTGTGTGTACCATGGGCCATAATATTGATTCAAAAGTGTTACGGTTAACTGACTCTTCTCCGTCTTCTACTAGTACTTGTAATTCCCAAAGATTAGATATCCTAAAGCGACGACAACATGATGTCAAACTGGAAAAACTCAAGGAGCGGATTAGAAAACAGTGGGAACACTCAGAAGAAACAAATGGCCAGGGCCAGAACCTGGGTCATATTGACCATCCGGTAATGGTTGTTAATGTTGATAGCTCAGTGACAGCGAAAGTCAGGAAAGTGGCAACAGCTCCACCTGCTCCAACATATAAAG
Seq A exon
GCTTCAATCCTTCAGAGACCAAGATTCGAACACCTGATGGGAAAGTGTGGCAGGAGGCTGAGTTTCAAAACATGAGTAGAGAACTGTATCGTGACTTAGCACTTCACTTTGCAG
Seq C2 exon
ATGATAGCTCTATGAAAGAAAAACCAGCTGAAAAAAGTAGAGAGAAGAAAGTGGTCAAGCCAGTACGAAAAGTCCAAAAGGTAGCACAGTTATCAAGTTCAGAATGTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.615 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAAAAACTCAAGGAGCGG
R:
TCGTACTGGCTTGACCACTTT
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development