DreEX0020924 @ danRer10
Exon Skipping
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14560823-14564467:-
Coord C1 exon
chr8:14563917-14564467
Coord A exon
chr8:14563582-14563695
Coord C2 exon
chr8:14560823-14560945
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGCGATTTCTTGTTTTTTAGGCT
3' ss Score
9.63
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
TTTGTTACCGACAGAGGTGGATATCCTTCAGCCTGATTTTACTCTAAGCCAGCTGGTGTATCAGCGTGACACCCGAGACATGCAGACCGCAGACCTGGACAGCCTGCACTCCTCAGCTGTAGACAGCACATCAGTACACTACCTCAATGATCTGTCTGCTCTTAACGCCATCCAGCAGCCTGACCAACCCATATTAGAGTCAGAGGGCAGGCCCAGAACACAATTACAGGCTAACACATCTCAGACGTCCAGTCCGGGCTCAATTGCTTCTGCACAACGGTTAGAGAGCCTGCGGCAGCGTGTGCCTGATGAAAAGATAGAGAAGCTGAAAGAGAAAATCCGCAGACAGAAGAAACATCTGGAGGAAACGGAGGAGAGAAGCAAGCTTTTGGGATACCTGGAGCAACCTGTGGGTATTGGGACAACCGGATACAATACCGCAGTACCCACTGCTAAAGTTCGGAAGGTGGCCCCAGCCCCTCCTGCACCCATTTATAAAG
Seq A exon
GCTTCAACACCAGTGAGACTAAGATTCGCACATCTGATGGGAAAGTGTGGGCAGAGGAGGAGTTCCAGAACCTAAGCAGAGAAATATACAGAGACCTGACGCGAAAGCTCACAG
Seq C2 exon
CACAGAGCACAAAACCAAAGCAGAGGCCTAGAGAACGGGAGAAGGTGAAAGAGAAGAAACCATCCAAGCCTGTTAGGAAAGTCCACAGATCCTCCTCTGCACCAGACTCAAATGCTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.692 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAACGGAGGAGAGAAGCA
R:
GTCTGGTGCAGAGGAGGATCT
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]