GgaEX1014806 @ galGal4
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6025892-6030556:-
Coord C1 exon
chr8:6029940-6030556
Coord A exon
chr8:6029308-6029418
Coord C2 exon
chr8:6025892-6026005
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTCAATTGTTTGCTTCCAGGTT
3' ss Score
9.59
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAGACATGACAGAGATGAACGGGATCTCCACAGAAGAGATTTTGAAAGTCCATGTTCTTCTGCTGCAGATAAGACTGTTGTTAGATATTTAAATGACGGACCAGCAATTGATGCCTTGCAAAATAACGAGGCATTTCTTAAAGCCGCAACACCTCCAAGATTGGAAGAGGAAAAAACTAGCAGCTCCAGAGGAGATGAGAGTAGCAGTAAAGCTCCCCTGAGTAACACATCCCAGGACGGTGAACTGAAAGTGTCTTTCCCTTCTGCCATGAGCACTAGTGCTCATAGGCTGGAAATCTTGAAACGGCGGCAGCACGATGCTAAGCTGGAGAAGCTGAAGGAGCGGATTCGTAAGCAGTGGGAGCATTCTGAAGAGCTGGGTGGCAGAGGGCAGCACTCAGGATTTGCTGAACAGCCTGTAGTGATCACAAATGTGGAGAATACTGTTACTCCCAAAGTCAGGAAAGTGACAGCTGCACCTGCTGCTCCAACATACAAAG
Seq A exon
GTTTCAATCCTGCTGAAACTAAGATTCGTGCTCCGGATGGAAAGATCTGGCATGAGCAAGGATTTCACATTGGTCGGGAACTATGTAGAGATATAGCACTCCAGTTGACAG
Seq C2 exon
AGAATTCGACTATGAAAGAAAAACCTGGTGAGAGAAACAAAGAGAGAAAACCATCCAGACCAGTGCGGAAAGTTCAGAAACTGACACAGTCATCAAATCCAGAGTCCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'4-8,'4-7,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=0.553 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGATGCTAAGCTGGAGAA
R:
CGCACTGGTCTGGATGGTTTT
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]