RnoEX0020103 @ rn6
Exon Skipping
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73584917-73615713:-
Coord C1 exon
chr13:73615097-73615713
Coord A exon
chr13:73588222-73588335
Coord C2 exon
chr13:73584917-73585030
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTTGGTGTGTATCAGGTT
3' ss Score
7.28
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCGGAATAGCCATTGCTGCGATTTTGAGAGTGCTCAACCCTCTGTCATCAGTGATACAGTTGTTAGATTTTTAAATGATGGACCAGCAATTGATGCATTGCACAGTTCTGAATGTTTAATGAAAATGGGAGTGCATATAAGAACTGAGGAAGAAATGCCTAACAGAACAAAAGGAAGTGAGAACAACTCAAAGCCTTCCCTTAACAGCATGGAGCATGATGTTGATCCGAACGTGTTGCTGCTGTCTGACTCTTCTCCATCCTCTACTAGTGCCTGTAATTCCCAAAGAGTAGGTATTTGTAAGCGGCAACAACATGATGTTAAGCTGGAAAAACTTAAAGAGCGGATTAGGAAACAGTGGGAACACTCAGAAGAAATAAATGGCCACGCTCAGACTCTAGGTCATATTGACCATCCAGTAATGGTTGTTAATGTTGACAACTCAGTGACAACAAAAGTTAGGAAAGTGGCAACAGCACCACCCGCTCCAGCATACAAAG
Seq A exon
GTTTCAACCCTTCAGAGACGAAGATTCGCACTCCTGATGGAAAAGTGTGGCAAGAGGCGGAGTTTCAGAGCATGAGCAGAGAGCTGTACCACGACTTAGCACTTCAGTTCGCAG
Seq C2 exon
ATGATACCTCTGTAAAAGAGAAGCCTGTTGAAAAAAGTAAAGAGAAAAAAGTGGTCAAACCAGTACGAAAAATCCAAAAAGTGACACAGTTGTCAAATCCAGAATGCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-'9-15,'9-14,11-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=0.513 C2=0.949
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGATTAGGAAACAGTGGGA
R:
ACTGTGTCACTTTTTGGATTTTTCGT
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]