BtaEX0009019 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011390 | CHRND
Description
Bos taurus cholinergic receptor, nicotinic, delta (CHRND), mRNA. [Source:RefSeq mRNA;Acc:NM_174271]
Coordinates
chr2:120976508-120977145:+
Coord C1 exon
chr2:120976508-120976617
Coord A exon
chr2:120976715-120976870
Coord C2 exon
chr2:120977036-120977145
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTCCGTGTCCCCCAGCAA
3' ss Score
7.97
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
GGCTGGACAGACAGCCGGCTGCAGTGGGATGCAGAAGACTTTGGGAACATCAGCGTCCTGCGTCTGCCCGCTGACATGGTGTGGCTCCCAGAGATTGTGCTGGAGAACAA
Seq A exon
CAATGACGGCTCCTTCCAGATCTCCTATTCCTGCAACGTGCTCATCTACCCCTCGGGCTCCGTCTACTGGCTGCCACCCGCCATCTTCCGTTCTTCCTGCCCCATCTCTGTCACCTACTTCCCCTTCGACTGGCAGAACTGCTCCCTCAAGTTCAG
Seq C2 exon
TTCGCTCAAGTACACGACCAAGGAGATCACCCTGAGCCTGAAGCAGGCTGAAGAAGATGGCCGCTCTTACCCCGTGGAGTGGATCATCATCGATCCCGAGGGCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011390_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.3=100)
A:
PF0293118=Neur_chan_LBD=FE(23.5=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAGACAGCCGGCT
R:
CTGTGAAGCCCTCGGGATCG
Band lengths:
218-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development