GgaEX1015449 @ galGal3
Exon Skipping
Gene
ENSGALG00000007899 | F1NJ26_CHICK
Description
NA
Coordinates
chr9:16706953-16707541:+
Coord C1 exon
chr9:16706953-16707062
Coord A exon
chr9:16707180-16707335
Coord C2 exon
chr9:16707426-16707541
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCTCAGTTTCTCTCATGCAGCAA
3' ss Score
6.98
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
AGCTGGACTGATTACCGCCTGCAGTGGAACACATCTGAGTTTGGGGGCGTCGACGTGCTCCGCCTGCTGCCAGAGATGCTGTGGCTGCCTGAGATAGTCCTGGAGAACAA
Seq A exon
CAATGACGGGCTCTTTGAAGTTGCCTACTACTGCAACGTGCTGGTCTACAACACTGGCTACGTCTACTGGCTGCCCCCCGCCATCTTCCGCAGCGCCTGCCCCATCAATGTCAACTTCTTCCCCTTTGATTGGCAGAACTGCACCCTCAAATTCAG
Seq C2 exon
CTCATTGGCATACAATGCACAGGAGATCAACATGCACCTGAAGGAGGAGAGTGACCCAGAGACCGAAAAGAATTACCGGGTGGAGTGGATCATCATTGACCCCGAAGGCTTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.1=100)
A:
PF0293118=Neur_chan_LBD=FE(23.2=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGACTGATTACCGCCT
R:
CCGTGAAGCCTTCGGGGTC
Band lengths:
226-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]