DreEX0021724 @ danRer10
Exon Skipping
Gene
ENSDARG00000019342 | chrnd
Description
cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
Coordinates
chr24:25543522-25545247:-
Coord C1 exon
chr24:25545102-25545247
Coord A exon
chr24:25544034-25544189
Coord C2 exon
chr24:25543522-25543631
Length
156 bp
Sequences
Splice sites
3' ss Seq
TATTTGTTTCTTTTAAACAGCAA
3' ss Score
7.68
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AATGTTGTGGCCGAAATGAAGAGGAGCGCCTCATCAATTATCTTTTTAAGGAGCGTGGCTACAACAAAGAGCTTCGGCCGGTCCAAAATAAAGATGAAACTGTAGATATTTACCTGGCTCTGACACTTTCTAATCTCATTTCCTTG
Seq A exon
CAATGATGCCCAGTTTCAGGTGGCTTATTACTGTAACGTGCTGATTTATTCCAGTGGAGATATGTACTGGTTGCCTCCAGCTATATTTCGGAGCTCCTGCTCTATAAATGTCAACTACTTCCCCTTTGATTGGCAAAACTGCTCACTAAAGTTCAG
Seq C2 exon
CTCGTTAACTTACAACGCTAAAGAGATTAGCTTAAATCTGAAAATGGAGCAGGAAAATACAACATACTACAAGGTGGAATGGATCATCATTGATCCTGAAGGATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019342_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.6=83.7)
A:
PF0293118=Neur_chan_LBD=FE(23.5=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCCGAAATGAAGAGGAG
R:
TCAATGATGATCCATTCCACCTTGT
Band lengths:
234-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]