MmuEX6026013 @ mm9
Exon Skipping
Gene
ENSMUSG00000026251 | Chrnd
Description
cholinergic receptor, nicotinic, delta polypeptide [Source:MGI Symbol;Acc:MGI:87893]
Coordinates
chr1:89088789-89089530:+
Coord C1 exon
chr1:89088789-89088898
Coord A exon
chr1:89089061-89089216
Coord C2 exon
chr1:89089421-89089530
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTATGGTCTCCATCCCACAGCAA
3' ss Score
8.25
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCCTGGGTAGACAGCCGTCTACAGTGGGATGCCAACGACTTCGGGAACATCACTGTCCTGCGCCTGCCCCCTGACATGGTGTGGCTACCAGAGATTGTACTGGAGAACAA
Seq A exon
CAATGATGGCTCGTTCCAGATTTCTTATGCCTGCAATGTGCTTGTCTATGACTCGGGCTATGTGACCTGGCTGCCGCCCGCCATCTTCCGCTCCTCCTGCCCCATCTCAGTCACCTACTTCCCTTTCGACTGGCAGAACTGCTCCCTCAAATTCAG
Seq C2 exon
TTCACTCAAGTATACAGCCAAGGAGATCACACTTAGCCTGAAGCAGGAGGAGGAAAACAACCGCTCTTACCCCATCGAGTGGATCATCATTGACCCTGAAGGTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026251-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.2=100)
A:
PF0293118=Neur_chan_LBD=FE(23.4=100),PF0181912=Levi_coat=PU(7.5=11.3)
C2:
PF0293118=Neur_chan_LBD=FE(16.7=100),PF0181912=Levi_coat=FE(46.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGTAGACAGCCGTC
R:
GGTCAATGATGATCCACTCGA
Band lengths:
205-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: