BtaEX0009022 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120989363-120991065:+
Coord C1 exon
chr2:120989363-120989472
Coord A exon
chr2:120990005-120990160
Coord C2 exon
chr2:120990968-120991065
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACACCCTGGCCTGTCCGCAGCGT
3' ss Score
8.67
5' ss Seq
CCAGTGAGG
5' ss Score
4.09
Exon sequences
Seq C1 exon
CAGTGGTGTGACTACCGGCTTCGCTGGGACCCTCGAGACTACGGCGGCCTGTGGGTGCTTCGGGTGCCATCCACCATGGTGTGGCGGCCAGACATCGTGCTGGAGAACAA
Seq A exon
CGTGGACGGCGTGTTCGAGGTGGCCCTCTACTGCAACGTGCTCGTGTCTCCCGATGGCTGTGTGTACTGGCTGCCGCCGGCCATCTTCCGCTCCTCCTGCCCCGTCTCTGTCACCTTCTTCCCCTTCGACTGGCAGAACTGCTCCCTCATCTTCCA
Seq C2 exon
GTCCCAGACCTACAGCACCAATGAGATCAATTTGCAGCTGAGCCAGGAAGACGGTCAGACCATCGAATGGATTTTCATCGACCCCGAGGCCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943-'4-6,'4-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.7=100)
A:
PF0293118=Neur_chan_LBD=FE(24.1=100)
C2:
PF0293118=Neur_chan_LBD=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTGTGACTACCGGCTTC
R:
GAAGGCCTCGGGGTCGAT
Band lengths:
203-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development