GgaEX1015454 @ galGal3
Exon Skipping
Gene
ENSGALG00000007906 | F1NJ22_CHICK
Description
NA
Coordinates
chr9:16711043-16711775:+
Coord C1 exon
chr9:16711043-16711095
Coord A exon
chr9:16711182-16711337
Coord C2 exon
chr9:16711678-16711775
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCCTGCTCTTTTCCCCGCAGCAT
3' ss Score
11.51
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
Exon sequences
Seq C1 exon
CTGCGGGTGCCCTCCACCATGGTCTGGCTGCCCGACATTGTCTTGGAGAACAA
Seq A exon
CATCGATGGGACATTTGAGATCACACTCTATACCAACGTGCTAGTGTACCCTGATGGCAGCATCTACTGGCTGCCCCCCGCCATCTACCGCAGCTCCTGCTCCATCCACGTCACCTACTTCCCCTTTGACTGGCAGAACTGCACCATGGTCTTCCA
Seq C2 exon
GTCCCAGACATACAGCGCGAACGAAATCAACCTGCTGCTGACAGTGGAGGAAGGCCAGACCATAGAGTGGATCTTCATTGACCCCGAAGCCTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(7.8=100)
A:
PF0293118=Neur_chan_LBD=FE(23.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTCCACCATGGTCTG
R:
AAGGCTTCGGGGTCAATGAAG
Band lengths:
139-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]