MmuEX0011392 @ mm10
Exon Skipping
Gene
ENSMUSG00000026253 | Chrng
Description
cholinergic receptor, nicotinic, gamma polypeptide [Source:MGI Symbol;Acc:MGI:87895]
Coordinates
chr1:87206650-87208305:+
Coord C1 exon
chr1:87206650-87206759
Coord A exon
chr1:87207387-87207542
Coord C2 exon
chr1:87208208-87208305
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACACTGGCCTATGCACACAGTGT
3' ss Score
3.7
5' ss Seq
CCAGTGAGA
5' ss Score
3.73
Exon sequences
Seq C1 exon
CAATGGTGCGACTATCGCCTGCGCTGGGACCCAAAAGACTACGAAGGCCTGTGGATATTGAGGGTGCCATCTACTATGGTCTGGCGGCCAGATATCGTCCTGGAGAACAA
Seq A exon
TGTGGACGGTGTCTTCGAGGTGGCTCTCTACTGCAATGTCCTCGTGTCCCCCGACGGTTGTATCTACTGGCTGCCGCCTGCCATCTTCCGCTCCTCCTGCTCCATCTCTGTCACCTACTTCCCCTTCGATTGGCAGAACTGTTCCCTCGTCTTCCA
Seq C2 exon
ATCCCAGACTTACAGCACCAGTGAGATCAACTTGCAGCTGAGCCAGGAGGATGGGCAAGCCATTGAGTGGATCTTCATTGACCCGGAGGCTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026253_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.7=100)
A:
PF0293118=Neur_chan_LBD=FE(24.1=100)
C2:
PF0293118=Neur_chan_LBD=PD(20.9=93.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTATCGCCTGCGCTG
R:
AAAGCCTCCGGGTCAATGAAG
Band lengths:
195-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types