DreEX0021738 @ danRer10
Exon Skipping
Gene
ENSDARG00000086647 | chrng
Description
cholinergic receptor, nicotinic, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-3805]
Coordinates
chr2:45230730-45232899:+
Coord C1 exon
chr2:45230730-45230866
Coord A exon
chr2:45232552-45232707
Coord C2 exon
chr2:45232802-45232899
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTATGTGTGTAAAGTGT
3' ss Score
3.31
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAGCTCTCTGTAATCTGGAAGGATCCCTGCACAGAGATCTCATGGTGGGATACAACAAGAACATACGACCTGTGGAGAGCCATGAAGACATCATTGATGTGAAGATCAAGATGACCCTCACCAACCTCATTTCTCTG
Seq A exon
TGTGGATGGGCGTTTTGAAGTGGCGCTCTATGCTAACACACTGATAGATCCTGATGGCAGTGTGTACTGGTTGCCTCCTGCCATCTACCGAAGCTCCTGTGCCATCAAAGTCAACTATTTTCCCTTTGATTGGCAGAATTGCAGCATGGTGTTCAG
Seq C2 exon
GTCTCAGACATACAATTCCAATGAAATTACCCTGATGCTGTCGGACGAGGACAACGTCACTATGGAATGGATTGAGATCGACCCAGAGGCTTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086647_MULTIEX1-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(17.7=84.8)
A:
PF0293118=Neur_chan_LBD=FE(23.6=100)
C2:
PF0293118=Neur_chan_LBD=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTCTGTAATCTGGAAGGA
R:
CAGTAAAAGCCTCTGGGTCGA
Band lengths:
235-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]