BtaEX0009126 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7882146-7887442:-
Coord C1 exon
chr22:7887275-7887442
Coord A exon
chr22:7883478-7883533
Coord C2 exon
chr22:7882146-7882319
Length
56 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTTTTACCTTGCAGTCG
3' ss Score
9.31
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GACATATATGGGTCTTAGAAACCACTTCCCTGGTGAAGCTGAAACACTGTATAATTCCCTCGAGCCGTCTTATCAGAAGAGTCTTCAGACTTACTTAAAGAGTTCTGGCAGTGTAGCATCTCTTCCACAATCAGACAGGTCCTCATCTAGCTCCCAAGAAAGCCTCAA
Seq A exon
TCGCCCCTTTTCTGCAAAATGGTCTACAGCAAACCCATCTGCTGTGGCTGGAAGAG
Seq C2 exon
TATCAGCAGGCAGCAGCAAAGCCAGCTCTCTTCCTGGAAGCCTGCAGCGTTCACGAAGTGACATTGATGTGAATGCTGCTGCTGGTGCCAAGGCACATCATGCTGCCGGACAAGCTGTGCGAAGTGGCCGGTTAGGTGCAGGGGCCCTGAATCCAGGTTCCTATGCATCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333-'26-23,'26-22,28-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.497 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(13.3=50.9),PF123333=Ipi1_N=PD(2.7=3.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGAGCCGTCTTATCAGA
R:
CTTTGCTGCTGCCTGCTGATA
Band lengths:
133-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development