GgaEX6019747 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45305853-45308717:-
Coord C1 exon
chr2:45308550-45308717
Coord A exon
chr2:45307127-45307182
Coord C2 exon
chr2:45305853-45306023
Length
56 bp
Sequences
Splice sites
3' ss Seq
TATTGGATTTTGTCTTTCAGTCG
3' ss Score
7.53
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGCTTATTTGGGTCTTAGAAATCACTTTCCTAGTGAAGCAGAGACTTTGTACAATTCCCTTGAGCCACCTTATCAAAGAAGCCTCCAGACATACTTGAAGAATTCTGGCAGTATAGCATCTCTCCCTCAGTCGGACAGGTCATCTTCTAGCTCACAGGAGAGCCTCAA
Seq A exon
TCGTCCTCTATCTTCTAAATGGTCTGCAGCCAGCCCAGCCAGCTTTGCAGGCAGAG
Seq C2 exon
TTTCGGGCAGCAGCAAGAGTGTTCCAAGCCCAGGAACTCTGCAAAGGTCTCGCAGTGACATTGATGTTAATGCTGCTGCAGGGGCAAAGGCCCGCCATGCTTCTGGACAGACAGCTGGAGGTGGGCGCTTGTCAGCAGCTGGTCTGCCTCCAGGATCTTATGCTTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'49-56,'49-54,52-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.494 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(13.3=50.9),PF123333=Ipi1_N=PD(10.0=14.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTCCCTTGAGCCACCTT
R:
GCTTGGAACACTCTTGCTGCT
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]