RnoEX6038047 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122113605-122115296:+
Coord C1 exon
chr8:122113605-122113772
Coord A exon
chr8:122114303-122114358
Coord C2 exon
chr8:122115123-122115296
Length
56 bp
Sequences
Splice sites
3' ss Seq
ACATTCTTTTTACCTTTCAGTCG
3' ss Score
9.23
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACATACATGGGTCTTAGAAACCACTTTCCTGGTGAAGCTGAAACATTGTACAACTCCCTCGAGCCATCCTATCAGAAAAGTCTTCAAACATACTTAAAGAGTTCTGGAAGTGTAGCTTCTCTTCCACAGTCAGACAGGTCCTCGTCAAGCTCACAAGAAAGCCTCAA
Seq A exon
TCGTCCTTTTTCATCTAAGTGGTCAACAGCAAATCCTTCAGCTGTAGCTGGAAGAG
Seq C2 exon
TGTCGGTGGGAGGCAGCAAAGCCAGCCCCCTTCCAGGAAGCCTGCAGCGCTCTCGAAGTGACATTGACGTGAATGCCGCCGCCGGTGCCAAGGCGCATCATGCTGCTGGACAGGCTGTGCGAAGTGGGCGTTTAGGCGCAGGTGCCCTGAATCCAGGTTCCTATGCATCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'33-30,'33-28,34-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(13.3=50.9),PF123333=Ipi1_N=PD(4.0=5.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCGTCAAGCTCACAAG
R:
CCTGTCCAGCAGCATGATGC
Band lengths:
145-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]